Exploring the unmapped DNA and RNA reads in a songbird genome
Author:
Funder
European Research Council
Leverhulme Trust
Natural Environment Research Council
Publisher
Springer Science and Business Media LLC
Subject
Genetics,Biotechnology
Link
http://link.springer.com/content/pdf/10.1186/s12864-018-5378-2.pdf
Reference61 articles.
1. Isakov O, Modai S, Shomron N. Pathogen detection using short-RNA deep sequencing subtraction and assembly. Bioinformatics. 2011;27:2027–30.
2. Samuels DC, Han L, Li J, Quanghu S, Clark TA, Shyr Y, et al. Finding the lost treasures in exome sequencing data. Trends Genet. 2013;29:593–9. https://doi.org/10.1016/j.tig.2013.07.006 .
3. Gouin A, Legeai F, Nouhaud P, Whibley A, Simon J-C, Lemaitre C. Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads. Heredity. 2015;114:494–501. https://doi.org/10.1038/hdy.2014.85 .
4. Whitacre LK, Tizioto PC, Kim J, Sonstegard TS, Schroeder SG, Alexander LJ, et al. What’s in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual. BMC Genomics. 2015;16:1114. https://doi.org/10.1186/s12864-015-2313-7 .
5. Usman T, Hadlich F, Demasius W, Weikard R, Kühn C. Unmapped reads from cattle RNAseq data: a source for missing and misassembled sequences in the reference assemblies and for detection of pathogens in the host. Genomics. 2017;109:36–42. https://doi.org/10.1016/j.ygeno.2016.11.009 .
Cited by 23 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献
1. Genome-wide analysis of early vascular tunic repair and regeneration for Botrylloides digenesis reveals striking similarities to human wound healing.;Developmental Biology;2024-05
2. Transcriptional and functional predictors of potato virus Y-induced tuber necrosis in potato (Solanum tuberosum);Frontiers in Plant Science;2024-04-04
3. The effect of missing data on evolutionary analysis of sequence capture bycatch, with application to an agricultural pest;Molecular Genetics and Genomics;2024-02-21
4. Unmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattle;Veterinary Research;2023-10-18
5. Intraspecific Comparative Analysis Reveals Genomic Variation of Didymella arachidicola and Pathogenicity Factors Potentially Related to Lesion Phenotype;Biology;2023-03-21
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3