Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function-Reference-Cited by-同舟云学术

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Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function

Published:2019-06-20 Issue:1 Volume:20 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Benton Mary Lauren,Talipineni Sai Charan,Kostka Dennis,Capra John A.

Funder

March of Dimes Foundation

Foundation for the National Institutes of Health

Burroughs Wellcome Fund

U.S. National Library of Medicine

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-019-5779-x.pdf

Reference89 articles.

1. Shlyueva D, Stampfel G, Stark A. Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet [Internet]. 2014;15(4):272–86.

2. Andersson R, Sandelin A, Danko CG. A unified architecture of transcriptional regulatory elements. Trends Genet. 2015;31:426–33.

3. Ong C, Corces V. Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat Rev Genet [Internet]. 2011;12(4):283–93.

4. Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A. 2010;107(50):21931–6.

5. Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, et al. Systematic localization of common disease-associated variation in regulatory DNA. Science (80-) [Internet]. 2012;337(6099):1190–95.

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2. Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation;Nucleic Acids Research;2024-07-05

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5. Validated Negative Regions (VNRs) in the VISTA Database might be Truncated Forms of Bona Fide Enhancers;Advanced Genetics;2024-05-16

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