P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads-Reference-Cited by-同舟云学术

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P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads

Published:2018-03-02 Issue:1 Volume:19 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Zhu Bai-Han,Xiao Jun,Xue Wei,Xu Gui-Cai,Sun Ming-Yuan,Li Jiong-Tang

Funder

Special Scientific Research Funds for Central Non-profit Institutes, Chinese Academy of Fishery Sciences

National Natural Science Foundation of China

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-018-4567-3.pdf

Reference41 articles.

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2. Zhu BH, Song YN, Xue W, Xu GC, Xiao J, Sun MY, Sun XW, Li JT. PEP_scaffolder: using (homologous) proteins to scaffold genomes. Bioinformatics. 2016;32(20):3193–5.

3. Xue W, Li JT, Zhu YP, Hou GY, Kong XF, Kuang YY, Sun XW. L_RNA_scaffolder: scaffolding genomes with transcripts. BMC Genomics. 2013;14:604.

4. Zhao W, He X, Hoadley KA, Parker JS, Hayes DN, Perou CM. Comparison of RNA-Seq by poly (a) capture, ribosomal RNA depletion, and DNA microarray for expression profiling. BMC Genomics. 2014;15:419.

5. Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, et al. Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes. Genome Res. 2017;27(1):133–44.

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