MODSIDE: a motif discovery pipeline and similarity detector
Author:
Funder
U.S. Department of Education Graduate Fellowships in Areas of National Need
Publisher
Springer Science and Business Media LLC
Subject
Genetics,Biotechnology
Link
http://link.springer.com/content/pdf/10.1186/s12864-018-5148-1.pdf
Reference27 articles.
1. Harbison C, Gordon D, Lee T, Rinaldi N, Macisaac K, Danford T, et al. Transcriptional regulatory code of a eukaryotic genome. Nature. 2004;431(7004):99–104.
2. Hu J, Li B, Kihara D. Limitations and potentials of current motif discovery algorithms. Nucleic Acids Res. 2005;33(15):4899–913.
3. MacIsaac KD, Fraenkel E. Practical strategies for discovering regulatory DNA sequence motifs. PLoS Comput Biol. 2006;2(4):e36.
4. Hu J, Yang YD, Kihara DEMD. An ensemble algorithm for discovering regulatory motifs in DNA sequences. BMC Bioinformatics. 2006;7:342.
5. Jin VX, Apostolos J, Nagisetty NS, Farnham PJ. W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data. Bioinformatics. 2009;25(23):3191–3.
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1. A comparative benchmark of classic DNA motif discovery tools on synthetic data;Briefings in Bioinformatics;2021-08-05
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