Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer-Reference-Cited by-同舟云学术

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Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

Published:2016-01-28 Issue:1 Volume:5 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:GigaSci

Author:

Benítez-Páez Alfonso,Portune Kevin J.,Sanz Yolanda

Funder

Seventh Framework Programme (BE)

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://academic.oup.com/gigascience/article-pdf/5/1/1/10843489/13742_2016_Article_111.pdf

Reference21 articles.

1. Quick J, Quinlan AR, Loman NJ. A reference bacterial genome dataset generated on the MinION portable single-molecule nanopore sequencer. Gigascience. 2014;3:22.

2. Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, et al. Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics. 2014;30:2709–16.

3. Loman NJ, Quinlan AR. Poretools: a toolkit for analyzing nanopore sequence data. Bioinformatics. 2014;30:3399–401.

4. Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, et al. poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics. 2014;31:114–5.

5. Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 2012;41:e1.

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