Dependency of codon usage on protein sequence patterns: a statistical study-Reference-Cited by-同舟云学术

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Dependency of codon usage on protein sequence patterns: a statistical study

Published:2014-01-10 Issue:1 Volume:11 Page:
ISSN:1742-4682
Container-title:Theoretical Biology and Medical Modelling
language:en
Short-container-title:Theor Biol Med Model

Author:

Foroughmand-Araabi Mohammad-Hadi,Goliaei Bahram,Alishahi Kasra,Sadeghi Mehdi

Publisher

Springer Science and Business Media LLC

Subject

Health Informatics,Modelling and Simulation

Link

https://link.springer.com/content/pdf/10.1186/1742-4682-11-2.pdf

Reference34 articles.

1. Nirenberg M, Leder P, Bernfield M, Brimacombe R, Trupin J, Rottman F, O’Neal C: RNA codewords and protein synthesis, VII. On the general nature of the RNA code. Proc Natl Acad Sci. 1965, 53 (5): 1161-1168. 10.1073/pnas.53.5.1161.

2. Yang Z, Nielsen R: Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage. Mol Biol Evol. 2008, 25 (3): 568-579. 10.1093/molbev/msm284.

3. Nakamura Y, Gojobori T, Ikemura T: Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res. 2000, 28 (1): 292-10.1093/nar/28.1.292.

4. Suzuki H, Brown CJ, Forney LJ, Top EM: Comparison of correspondence analysis methods for synonymous codon usage in bacteria. DNA Res. 2008, 15 (6): 357-365. 10.1093/dnares/dsn028.

5. Suzuki H, Saito R, Tomita M: Measure of synonymous codon usage diversity among genes in bacteria. BMC Bioinformatics. 2009, 10 (1): 167-10.1186/1471-2105-10-167.

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. GC3-biased gene domains in mammalian genomes: Fig. 1.;Bioinformatics;2015-05-26

2. Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach;Journal of Bioinformatics and Computational Biology;2015-04

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