Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments-Reference-Cited by-同舟云学术

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Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Published:2019-03-22 Issue:1 Volume:7 Page:
ISSN:2049-2618
Container-title:Microbiome
language:en
Short-container-title:Microbiome

Author:

Clarke Erik L.,Taylor Louis J.,Zhao Chunyu,Connell Andrew,Lee Jung-Jin,Fett Bryton,Bushman Frederic D.,Bittinger Kyle

Funder

National Heart, Lung, and Blood Institute

Pennsylvania Department of Health

National Institute of Allergy and Infectious Diseases

Publisher

Springer Science and Business Media LLC

Subject

Microbiology (medical),Microbiology

Link

http://link.springer.com/content/pdf/10.1186/s40168-019-0658-x.pdf

Reference100 articles.

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2. Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444:1027–31.

3. Muegge BD, Kuczynski J, Knights D, Clemente JC, Gonzalez A, Fontana L, et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science. 2011;332:970–4.

4. Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 2012;13:R79 Available from: http://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-9-r79 .

5. Lee STM, Kahn SA, Delmont TO, Shaiber A, Esen özcan C, Hubert NA, et al. Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics. Microbiome. 2017;5:1–10.

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