The evolutionary signal in metagenome phyletic profiles predicts many gene functions-Reference-Cited by-同舟云学术

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The evolutionary signal in metagenome phyletic profiles predicts many gene functions

Published:2018-07-10 Issue:1 Volume:6 Page:
ISSN:2049-2618
Container-title:Microbiome
language:en
Short-container-title:Microbiome

Author:

Vidulin Vedrana,Šmuc Tomislav,Džeroski Sašo,Supek Fran^ORCID

Funder

Seventh Framework Programme

European Research Council

European Regional Development Fund

Javna Agencija za Raziskovalno Dejavnost RS

Horizon 2020 Framework Programme

Publisher

Springer Science and Business Media LLC

Subject

Microbiology (medical),Microbiology

Link

http://link.springer.com/content/pdf/10.1186/s40168-018-0506-4.pdf

Reference82 articles.

1. Jiang Y, et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol. 2016;17:184.

2. Škunca N, Altenhoff A, Dessimoz C. Quality of computationally inferred gene ontology annotations. PLoS Comput Biol. 2012;8:e1002533.

3. du Plessis L, Škunca N, Dessimoz C. The what, where, how and why of gene ontology—a primer for bioinformaticians. Brief Bioinform. 2011;12:723–35.

4. Hu P, et al. Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 2009;7:e1000096.

5. Schaefer MH, et al. Adding protein context to the human protein-protein interaction network to reveal meaningful interactions. PLoS Comput Biol. 2013;9:e1002860.

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