VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data-Reference-Cited by-同舟云学术

登录注册会员服务联系我们

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Published:2017-07-06 Issue:1 Volume:5 Page:
ISSN:2049-2618
Container-title:Microbiome
language:en
Short-container-title:Microbiome

Author:

Ren Jie,Ahlgren Nathan A.,Lu Yang Young,Fuhrman Jed A.,Sun Fengzhu

Funder

National Institute of General Medical Sciences

Division of Mathematical Sciences

Division of Ocean Sciences

Gordon and Betty Moore Foundation

Publisher

Springer Science and Business Media LLC

Subject

Microbiology (medical),Microbiology

Link

http://link.springer.com/content/pdf/10.1186/s40168-017-0283-5.pdf

Reference82 articles.

1. Breitbart M, Rohwer F. Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 2005;13:278–84.

2. Hurwitz BL, U'Ren JM, Youens-Clark K. Computational prospecting the great viral unknown. FEMS Microbiol Lett 2016; 363. doi: 10.1093/femsle/fnw077 .

3. Norman JM, Handley SA, Baldridge MT, Droit L, Liu CY, Keller BC, Kambal A, Monaco CL, Zhao G, Fleshner P, et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell. 2015;160:447–60.

4. Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, et al. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proc Natl Acad Sci. 2015;112:11941–6.

5. Kimura M, Jia Z-J, Nakayama N, Asakawa S. Ecology of viruses in soils: past, present and future perspectives. Soil Sci Plant Nutr. 2008;54:1–32.

Cited by 456 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. TransGINmer: Identifying viral sequences from metagenomes with self-attention and Graph Isomorphism Network;Future Generation Computer Systems;2024-12

2. A survey of k-mer methods and applications in bioinformatics;Computational and Structural Biotechnology Journal;2024-12

3. Exploring the synergy of artificial intelligence in microbiology: Advancements, challenges, and future prospects;Computational and Structural Biotechnology Reports;2024-12

4. Metagenome sequence data mining for viral interaction studies: Review on progress and prospects;Virus Research;2024-11

5. Use of whole genome sequencing for surveillance and control of foodborne diseases: status quo and quo vadis;Frontiers in Microbiology;2024-09-13

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号京ICP备18003416号-3