MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis-Reference-Cited by-同舟云学术

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MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

Published:2018-09-15 Issue:1 Volume:6 Page:
ISSN:2049-2618
Container-title:Microbiome
language:en
Short-container-title:Microbiome

Author:

Uritskiy Gherman V.,DiRuggiero Jocelyne^ORCID,Taylor James

Funder

National Aeronautics and Space Administration

National Science Foundation

National Human Genome Research Institute

Publisher

Springer Science and Business Media LLC

Subject

Microbiology (medical),Microbiology

Link

http://link.springer.com/content/pdf/10.1186/s40168-018-0541-1.pdf

Reference52 articles.

1. Jovel J, Patterson J, Wang W, Hotte N, O'Keefe S, Mitchel T, Perry T, Kao D, Mason AL, Madsen KL, et al. Characterization of the gut microbiome using 16S or shotgun metagenomics. Front Microbiol. 2016;7:459.

2. Mendes LW, Braga LPP, Navarrete AA, Souza DG, Silva GGZ, Tsai SM. Using metagenomics to connect microbial community biodiversity and functions. Curr Issues Mol Biol. 2017;24:103–18.

3. Quince C, Walker AW, Simpson JT, Loman NJ, Segata N. Shotgun metagenomics, from sampling to analysis. Nat Biotechnol. 2017;35(9):833–44.

4. Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS. Application of metagenomics in the human gut microbiome. World J Gastroenterol. 2015;21(3):803–14.

5. Guo J, Li J, Chen H, Bond PL, Yuan Z. Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements. Water Res. 2017;123:468–78.

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