Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin-Reference-Cited by-同舟云学术

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Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin

Published:2018-10-20 Issue:1 Volume:12 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Conrad T.^ORCID,Kniemeyer O.,Henkel S. G.,Krüger T.,Mattern D. J.,Valiante V.,Guthke R.,Jacobsen I. D.,Brakhage A. A.,Vlaic S.,Linde J.

Funder

Jena School for Microbial Communication

Deutsche Forschungsgemeinschaft (DFG) CRC/Transregio 124, subproject A1

Deutsche Forschungsgemeinschaft (DFG) CRC/Transregio 124, subproject C5

Deutsche Forschungsgemeinschaft (DFG) CRC/Transregio 124, subproject INF

Deutsche Forschungsgemeinschaft (DFG) CRC/Transregio 124, subproject Z2

Thüringer Aufbaubank

German Federal Ministry of Education & Research

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modeling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12918-018-0620-8.pdf

Reference65 articles.

1. Ebrahim A, Brunk E, Tan J, O’Brien EJ, Kim D, Szubin R, et al. Multi-omic data integration enables discovery of hidden biological regularities. Nat Commun. 2016;7:13091.

2. Wu Y, Williams EG, Dubuis S, Mottis A, Jovaisaite V, Houten SM, et al. Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population. Cell. 2014;158:1415–30. https://doi.org/10.1016/j.cell.2014.07.039 .

3. Chen R, Mias GI, Li-Pook-Than J, Jiang L, Lam HYK, Chen R, et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell. 2012;148:1293–307.

4. Aebersold R, Mann M. Mass-spectrometric exploration of proteome structure and function. Nature. 2016;537:347–55.

5. Michalski A, Cox J, Mann M. More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J Proteome Res. 2011;10:1785–93.

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1. A network-based model ofAspergillus fumigatuselucidates regulators of development and defensive natural products of an opportunistic pathogen;2023-05-13

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4. Transcriptome Sequencing-Based Mining of Genes Associated With Pubertal Initiation in Dolang Sheep;Frontiers in Genetics;2022-03-03

5. Heterogeneity in the transcriptional response of the human pathogen Aspergillus fumigatus to the antifungal agent caspofungin;Genetics;2021-10-30

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