Qualitative dynamics semantics for SBGN process description

Author:

Rougny Adrien,Froidevaux Christine,Calzone Laurence,Paulevé Loïc

Funder

Paris-Saclay IDEX IMSV

ANR

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modeling and Simulation,Structural Biology

Reference65 articles.

1. KEGG Pathway Database. http://www.genome.jp/kegg/pathway.html%23metabolism . Accessed 2016-02-08.

2. ACSN - Atlas of Cancer Signalling Networks. https://acsn.curie.fr . Accessed 2016-02-08.

3. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, et al.A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013; 31(5):419–25.

4. Joshi-Tope G, Gillespie M, Vastrik I, D’Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath G, Wu G, Matthews L, et al.Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 2005; 33(suppl 1):428–32.

5. Calzone L, Gelay A, Zinovyev A, Radvanyi F, Barillot E. A comprehensive modular map of molecular interactions in RB/E2F pathway. Mol Syst Biol. 2008; 4(1). http://msb.embopress.org/content/4/1/0174.export .

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