Snoopy’s hybrid simulator: a tool to construct and simulate hybrid biological models-Reference-Cited by-同舟云学术

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Snoopy’s hybrid simulator: a tool to construct and simulate hybrid biological models

Published:2017-07-28 Issue:1 Volume:11 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Herajy Mostafa,Liu Fei,Rohr Christian,Heiner Monika

Funder

National Natural Science Foundation of China

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modelling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12918-017-0449-6.pdf

Reference45 articles.

1. Pahle J. Biochemical simulations: stochastic, approximate stochastic and hybrid approaches. Brief Bioinform. 2009; 10(1):53. doi: 10.1093/bib/bbn050 .

2. Gillespie D. Stochastic simulation of chemical kinetics,. Annu Rev Phys Chem. 2007; 58(1):35–55. doi: 10.1146/annurev.physchem.58.032806.104637 .

3. Gillespie DT. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J Comput Phys. 1976; 22(4):403–34. doi: 10.1016/0021-9991(76)90041-3 .

4. Gillespie D. Exact stochastic simulation of coupled chemical reactions. J Phys Chem. 1977; 81(25):2340–361. doi: 10.1021/j100540a008 .

5. Cao Y, Gillespie D, Petzold L. Adaptive explicit-implicit tau-leaping method with automatic tau selection. J Chem Phys. 2007; 126(22):224101. doi: 10.1063/1.2745299 .

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