Suffix tree searcher: exploration of common substrings in large DNA sequence sets-Reference-Cited by-同舟云学术

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Suffix tree searcher: exploration of common substrings in large DNA sequence sets

Published:2014-07-23 Issue:1 Volume:7 Page:
ISSN:1756-0500
Container-title:BMC Research Notes
language:en
Short-container-title:BMC Res Notes

Author:

Minkley David,Whitney Michael J,Lin Song-Han,Barsky Marina G,Kelly Chris,Upton Chris

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology,General Medicine

Link

https://link.springer.com/content/pdf/10.1186/1756-0500-7-466.pdf

Reference20 articles.

1. Bentley S: Taming the next-gen beast. Nat Rev Microbiol. 2010, 8 (3): 161-10.1038/nrmicro2322.

2. Metzker ML: Sequencing technologies - the next generation. Nat Rev Genet. 2010, 11 (1): 31-46. 10.1038/nrg2626.

3. van Vliet AHM: Next generation sequencing of microbial transcriptomes: challenges and opportunities. FEMS Microbiol Lett. 2010, 302 (1): 1-7. 10.1111/j.1574-6968.2009.01767.x.

4. Sadeque A, Barsky M, Marass F, Kruczkiewicz P, Upton C: JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences. Viruses. 2010, 2 (9): 1867-1885. 10.3390/v2091867.

5. Gusfield D: Introduction to Suffix Trees. Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology. 1997, Cambridge: Cambridge University Press, 89-93.

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2. A Distributed Approach for Constructing Generalized Suffix Tree on Spark by Using Optimized Elastic Range Algorithm;2017 Fifth International Conference on Advanced Cloud and Big Data (CBD);2017-08

3. ExactSearch: a web-based plant motif search tool;Plant Methods;2016-04-28

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