Comparative analysis of codon usage bias in the chloroplast genomes of eighteen Ampelopsideae species (Vitaceae)-Reference-Cited by-同舟云学术

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Comparative analysis of codon usage bias in the chloroplast genomes of eighteen Ampelopsideae species (Vitaceae)

Published:2024-09-02 Issue:1 Volume:25 Page:
ISSN:2730-6844
Container-title:BMC Genomic Data
language:en
Short-container-title:BMC Genom Data

Author:

Hu Qun,Wu Jiaqi,Fan Chengcheng,Luo Yongjian,Liu Jun,Deng Zhijun,Li Qing

Funder

Li Qing Youth Mentorship Project

2023 Provincial Rural Revitalization Strategy Special Funds Seed Industry Revitalization Project, Operation and Maintenance of Perennial Special Cash Crop Resource Nurseries in Guangdong Province

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1186/s12863-024-01260-8.pdf

Reference54 articles.

1. Quax TEF, Claassens NJ, Söll D, van der Oost J. Codon bias as a means to fine-tune gene expression. Mol Cell. 2015;59:149–61.

2. Tang D, Wei F, Cai Z, Wei Y, Khan A, Miao J, et al. Analysis of codon usage bias and evolution in the chloroplast genome of Mesona Chinensis Benth. Dev Genes Evol. 2021;231:1–9.

3. Angellotti MC, Bhuiyan SB, Chen G, Wan X-F. CodonO: codon usage bias analysis within and across genomes. Nucleic Acids Res. 2007;35 Web Server issue:W132–6.

4. Tuller T, Waldman YY, Kupiec M, Ruppin E. Translation efficiency is determined by both codon bias and folding energy. Proc Natl Acad Sci U S A. 2010;107:3645–50.

5. Sheng J, She X, Liu X, Wang J, Hu Z. Comparative analysis of codon usage patterns in chloroplast genomes of five Miscanthus species and related species. PeerJ. 2021;9:e12173.

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