Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models-Reference-Cited by-同舟云学术

Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

Published:2017-01-17 Issue:1 Volume:12 Page:
ISSN:1745-6150
Container-title:Biology Direct
language:en
Short-container-title:Biol Direct

Author:

Bloom Jesse D.^ORCID

Funder

National Institute of General Medical Sciences

Pew Charitable Trusts

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Modelling and Simulation,Ecology, Evolution, Behavior and Systematics,Immunology

Link

http://link.springer.com/content/pdf/10.1186/s13062-016-0172-z.pdf

Reference102 articles.

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2. Nielsen R, Yang Z. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics. 1998; 148(3):929–36.

3. Suzuki Y, Gojobori T. A method for detecting positive selection at single amino acid sites. Mol Biol Evol. 1999; 16(10):1315–28.

4. Yang Z, Nielsen R, Goldman N, Pedersen A-MK.Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics. 2000; 155(1):431–49.

5. Pond SLK, Frost SD. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol. 2005; 22(5):1208–22.

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