Studying the gut virome in the metagenomic era: challenges and perspectives-Reference-Cited by-同舟云学术

Studying the gut virome in the metagenomic era: challenges and perspectives

Published:2019-10-28 Issue:1 Volume:17 Page:
ISSN:1741-7007
Container-title:BMC Biology
language:en
Short-container-title:BMC Biol

Author:

Garmaeva Sanzhima,Sinha Trishla,Kurilshikov Alexander,Fu Jingyuan,Wijmenga Cisca,Zhernakova Alexandra

Abstract

Abstract The human gut harbors a complex ecosystem of microorganisms, including bacteria and viruses. With the rise of next-generation sequencing technologies, we have seen a quantum leap in the study of human-gut-inhabiting bacteria, yet the viruses that infect these bacteria, known as bacteriophages, remain underexplored. In this review, we focus on what is known about the role of bacteriophages in human health and the technical challenges involved in studying the gut virome, of which they are a major component. Lastly, we discuss what can be learned from studies of bacteriophages in other ecosystems.

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Developmental Biology,Plant Science,General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Physiology,Ecology, Evolution, Behavior and Systematics,Structural Biology,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12915-019-0704-y.pdf

Reference143 articles.

1. Cobián Güemes AG, Youle M, Cantú VA, Felts B, Nulton J, Rohwer F. Viruses as winners in the game of life. Annu Rev Virol. 2016;3:197–214. https://doi.org/10.1146/annurev-virology-100114-054952 .

2. Galtier M, De Sordi L, Sivignon A, de Vallée A, Maura D, Neut C, et al. Bacteriophages targeting adherent invasive Escherichia coli strains as a promising new treatment for Crohn’s disease. J Crohn’s Colitis. 2017;11:jjw224. https://doi.org/10.1093/ecco-jcc/jjw224 .

3. Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, et al. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A. 2013;110:10771–6. https://doi.org/10.1073/pnas.1305923110 .

4. Rohwer F, Prangishvili D, Lindell D. Roles of viruses in the environment. Environ Microbiol. 2009;11:2771–4. https://doi.org/10.1111/j.1462-2920.2009.02101.x .

5. Suttle CA. Marine viruses — major players in the global ecosystem. Nat Rev Microbiol. 2007;5:801–12. https://doi.org/10.1038/nrmicro1750 .

Cited by 114 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Targeted viromes and total metagenomes capture distinct components of bee gut phage communities;Microbiome;2024-08-23

2. Dietary Effects on the Gut Phageome;International Journal of Molecular Sciences;2024-08-09

3. Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases;Journal of Hepatology;2024-08

4. The gut microbiota and diabetes: research, translation, and clinical applications – 2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum;Diabetologia;2024-06-24

5. The Gut Microbiota and Diabetes: Research, Translation, and Clinical Applications—2023 Diabetes, Diabetes Care, and Diabetologia Expert Forum;Diabetes;2024-06-24