Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA-Reference-Cited by-同舟云学术

Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA

Published:2013-02-13 Issue:1 Volume:10 Page:
ISSN:1742-4690
Container-title:Retrovirology
language:en
Short-container-title:Retrovirology

Author:

Shao Wei,Boltz Valerie F,Spindler Jonathan E,Kearney Mary F,Maldarelli Frank,Mellors John W,Stewart Claudia,Volfovsky Natalia,Levitsky Alexander,Stephens Robert M,Coffin John M

Publisher

Springer Science and Business Media LLC

Subject

Infectious Diseases,Virology

Link

http://link.springer.com/content/pdf/10.1186/1742-4690-10-18.pdf

Reference32 articles.

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3. Bushman FD, Hoffmann C, Ronen K, Malani N, Minkah N, Rose HM, Tebas P, Wang GP: Massively parallel pyrosequencing in HIV research. AIDS. 2008, 22: 1411-1415. 10.1097/QAD.0b013e3282fc972e.

4. Eriksson N, Pachter L, Mitsuya Y, Rhee SY, Wang C, Gharizadeh B, Ronaghi M, Shafer RW, Beerenwinkel N: Viral population estimation using pyrosequencing. PLoS Comput Biol. 2008, 4: e1000074-10.1371/journal.pcbi.1000074.

5. Le T, Chiarella J, Simen BB, Hanczaruk B, Egholm M, Landry ML, Dieckhaus K, Rosen MI, Kozal MJ: Low-abundance HIV drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use. PLoS One. 2009, 4: e6079-10.1371/journal.pone.0006079.

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