A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection-Reference-Cited by-同舟云学术

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A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection

Published:2014-06-19 Issue:1 Volume:15 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Bulla Ingo,Schultz Anne-Kathrin,Chesneau Christophe,Mark Tanya,Serea Florin

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-15-205.pdf

Reference52 articles.

1. Krogh A, Brown M, Mian IS, Sjölander K, Haussler D: Hidden Markov Models in computational biology: applications to protein modeling. J Mol Biol. 1994, 235 (5): 1501-1531.

2. Eddy S: Profile Hidden Markov Models. Bioinformatics. 1998, 14 (9): 755-763.

3. Brown DP, Krishnamurthy N, Sjölander K: Automated protein subfamily identification and classification. PLoS Comput Biol. 2007, 3 (8): e160-

4. Schultz AK, Zhang M, Leitner T, Kuiken C, Korber B, Morgenstern B, Stanke M: A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinformatics. 2006, 7: 265-

5. Laht S, Koua D, Kaplinski L, Lisacek F, Stöcklin R, Remm M: Identification and classification of conopeptides using profile Hidden Markov Models. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 2012, 1824 (3): 488-492. [ http://www.sciencedirect.com/science/article/pii/S1570963911003219 ],

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1. Antiretroviral resistance, genotypic characterization and origin of Human Immunodeficiency Virus among the infected wives of Intravenous drug users in Manipur;Scientific Reports;2018-10-12

2. gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances;PLOS ONE;2016-11-15

3. gmos: Rapid detection of genome mosaicism over short evolutionary distances;2016-05-16

4. Contribution of recombination to the evolutionary history of HIV;Current Opinion in HIV and AIDS;2015-03

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