How reliably can we predict the reliability of protein structure predictions?-Reference-Cited by-同舟云学术

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How reliably can we predict the reliability of protein structure predictions?

Published:2008-03-03 Issue:1 Volume:9 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Miklós István,Novák ' Ádám,Dombai Balázs,Hein Jotun

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-9-137.pdf

Reference47 articles.

1. Needleman SB, Wunsch CD: A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48(3):443–53. 10.1016/0022-2836(70)90057-4

2. Waterman M, Smith T, Beyer W: Some biological sequence metrics. Advan Math 1976, 20: 367–387. 10.1016/0001-8708(76)90202-4

3. Smith TF, Waterman MS: Identification of common molecular subsequences. J Mol Biol 1981, 147: 195–7. 10.1016/0022-2836(81)90087-5

4. Gotoh O: An improved algorithm for matching biological sequences. J Mol Biol 1982, 162: 705–708. 10.1016/0022-2836(82)90398-9

5. Waterman M: Parametric and ensemble sequence alignment algorithms. Bulletin of Mathematical Biology 1994, 5(4):743–767.

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2. Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs;BMC Bioinformatics;2015-04-01

3. Simultaneous Bayesian Estimation of Alignment and Phylogeny under a Joint Model of Protein Sequence and Structure;Molecular Biology and Evolution;2014-06-04

4. Quantifying variances in comparative RNA secondary structure prediction;BMC Bioinformatics;2013-05-01

5. Measuring the distance between multiple sequence alignments;Bioinformatics;2011-12-23

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