Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response

Author:

Vo Nam S,Phan Vinhthuy

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference27 articles.

1. Fielden MR, Brennan R, Gollub J: A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals. Toxicol Sci. 2007, 99 (1): 90-100. 10.1093/toxsci/kfm156.

2. Natsoulis G, Pearson C, Gollub J, Eynon P, Ferng J, Nair R, Idury R, Lee M, Fielden M, Brennan R, Roter A, Jarnagin K: The liver pharmacological and xenobiotic gene response repertoire. BMC Syst Biol. 2008, 4: 175-

3. Sutter T, He X, Dimitrov P, Xu L, Narasimhan G, George EO, Sutter CH, Grubbs C, Savory R, Stephan-Gueldner M, Kreder D, Taylor MJ, Lubet R, Patterson TA, Kensler TW: Multiple comparisons model-based clustering and ternary pattern tree numerical display of gene response to treatment: procedure and application to the preclinical evaluation of chemopreventive agents. Mol Cancer Ther. 2002, 1: 1283-92.

4. Geman D, d'Avignon C, Naiman D, Winslow R: Classifying gene expression profiles from pairwise mrna comparisons. Statistical applications in genetics and molecular biology. 2004, 3: Article 19

5. Hulshizer R, Blalock EM: Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data. BMC Bioinformatics. 2007, 8: 240-10.1186/1471-2105-8-240.

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