Logarithmic gap costs decrease alignment accuracy
Author:
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology
Link
http://link.springer.com/content/pdf/10.1186/1471-2105-7-527.pdf
Reference36 articles.
1. Swofford DL: PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods) 4.0 Beta. Sinauer Associates, Inc, Sunderland MA; 2002.
2. Odgen T, Rosenberg M: Multiple Sequence Alignment Accuracy and Phylogenetic Inference. Systematic Biology 2006, 55: 314–328. 10.1080/10635150500541730
3. Pearson WR, Lipman DJ: Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 1988, 85: 2444–2448. 10.1073/pnas.85.8.2444
4. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215: 403–410. 10.1006/jmbi.1990.9999
5. Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22: 4673–4680.
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