An optimized TOPS+ comparison method for enhanced TOPS models

Author:

Veeramalai Mallika,Gilbert David,Valiente Gabriel

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference36 articles.

1. Gilbert D, Westhead DR, Viksna J, Thornton J: A Computer System to Perform Structure Comparison using TOPS Representations of Protein Structure. J Comput Chem 2001, 26: 23–30. 10.1016/S0097-8485(01)00096-1

2. Gilbert D, Westhead DR, Viksna J: Techniques for Comparison, Pattern Matching and Pattern Discovery: From Sequences to Protein Topology. In Artificial Intelligence and Heuristic Methods in Bioinformatics, Volume 183 of NATO Science Series: Computer & Systems Sciences. Edited by: Frasconi P, Shamir R. IOS Press; 2003:128–147.

3. Viksna J, Gilbert D: Pattern Matching and Pattern Discovery Algorithms for Protein Topologies. In Algorithms in BioInformatics, Volume 2149 of Lecture Notes in Comput. Sci. Springer-Verlag; 2001:98–111.

4. Krasnogor N, Pelta DA: Measuring the Similarity of Protein Structures by Means of the Universal Similarity Metric. Bioinformatics 2004, 20(7):1015–1021. 10.1093/bioinformatics/bth031

5. Chew LP, Kedem K: Finding the Consensus Shape for a Protein Family. Algorithmica 2003, 38: 115–129. 10.1007/s00453-003-1045-2

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