MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts
Author:
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology
Link
http://link.springer.com/content/pdf/10.1186/1471-2105-12-472.pdf
Reference56 articles.
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3. Krogh A, et al.: Hidden markov models in computational biology: applications to protein modeling. J Mol Biol 1994, 235: 1503–1531.
4. Liu YC, Schmidt B, DouglasLM : MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities. Bioinformatics 2010, 26(16):1958–1964. 10.1093/bioinformatics/btq338
5. Do CB, et al.: ProbCons: probabilistic consistency-based multiple sequence alignment. Genome Res 2005, 15: 330–340. 10.1101/gr.2821705
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