The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies-Reference-Cited by-同舟云学术

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

Published:2008-08 Issue:S9 Volume:9 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Shi Leming,Jones Wendell D,Jensen Roderick V,Harris Stephen C,Perkins Roger G,Goodsaid Federico M,Guo Lei,Croner Lisa J,Boysen Cecilie,Fang Hong,Qian Feng,Amur Shashi,Bao Wenjun,Barbacioru Catalin C,Bertholet Vincent,Cao Xiaoxi Megan,Chu Tzu-Ming,Collins Patrick J,Fan Xiao-hui,Frueh Felix W,Fuscoe James C,Guo Xu,Han Jing,Herman Damir,Hong Huixiao,Kawasaki Ernest S,Li Quan-Zhen,Luo Yuling,Ma Yunqing,Mei Nan,Peterson Ron L,Puri Raj K,Shippy Richard,Su Zhenqiang,Sun Yongming Andrew,Sun Hongmei,Thorn Brett,Turpaz Yaron,Wang Charles,Wang Sue Jane,Warrington Janet A,Willey James C,Wu Jie,Xie Qian,Zhang Liang,Zhang Lu,Zhong Sheng,Wolfinger Russell D,Tong Weida

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-9-S9-S10.pdf

Reference56 articles.

1. Tan PK, Downey TJ, Spitznagel EL, Xu P, Fu D, Dimitrov DS, Lempicki RA, Raaka BM, Cam MC: Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Res. 2003, 31 (19): 5676-5684. 10.1093/nar/gkg763.

2. Ramalho-Santos M, Yoon S, Matsuzaki Y, Mulligan RC, Melton DA: "Stemness": transcriptional profiling of embryonic and adult stem cells. Science. 2002, 298 (5593): 597-600. 10.1126/science.1072530.

3. Ivanova NB, Dimos JT, Schaniel C, Hackney JA, Moore KA, Lemischka IR: A stem cell molecular signature. Science. 2002, 298 (5593): 601-604. 10.1126/science.1073823.

4. Fortunel NO, Otu HH, Ng HH, Chen J, Mu X, Chevassut T, Li X, Joseph M, Bailey C, Hatzfeld JA: Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature". Science. 2003, 302 (5644): 393-10.1126/science.1086384. author reply 393.

5. Miller RM, Callahan LM, Casaceli C, Chen L, Kiser GL, Chui B, Kaysser-Kranich TM, Sendera TJ, Palaniappan C, Federoff HJ: Dysregulation of gene expression in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned mouse substantia nigra. J Neurosci. 2004, 24 (34): 7445-7454. 10.1523/JNEUROSCI.4204-03.2004.

Cited by 206 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Enabling personalised disease diagnosis by combining a patient’s time-specific gene expression profile with a biomedical knowledge base;BMC Bioinformatics;2024-02-07

2. Review on Gene Expression Meta-analysis: Techniques and Implementations;Communications in Computer and Information Science;2024

3. Increased expression of individual genes in whole blood is associated with late-stage lung cancer at and close to diagnosis;Scientific Reports;2023-11-25

4. Ectopic Expression of MADS-Box Transcription Factor VvAGL12 from Grape Promotes Early Flowering, Plant Growth, and Production by Regulating Cell-Wall Architecture in Arabidopsis;Genes;2023-11-15

5. Genomics-based tools for drug discovery and development: From network maps to efficacy prediction;Journal of Holistic Integrative Pharmacy;2023-11