Hidden Markov model speed heuristic and iterative HMM search procedure-Reference-Cited by-同舟云学术

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Hidden Markov model speed heuristic and iterative HMM search procedure

Published:2010-08-18 Issue:1 Volume:11 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Johnson L Steven,Eddy Sean R,Portugaly Elon

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-11-431.pdf

Reference16 articles.

1. HMMER: biosequence analysis using profile hidden Markov models[ http://hmmer.org/ ]

2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 3: 403–410.

3. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389–3402. 10.1093/nar/25.17.3389

4. Karplus K, Barrett C, Hughey R: Hidden Markov models for detecting remote protein homologies. Bioinformatics 1998, 14(10):846–856. 10.1093/bioinformatics/14.10.846

5. Scheeff ED, Bourne PE: Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. BMC Bioinformatics 2006, 7: 410. 10.1186/1471-2105-7-410

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