Genomic distance under gene substitutions

Author:

Braga Marília D V,Machado Raphael,Ribeiro Leonardo C,Stoye Jens

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference13 articles.

1. Bergeron A, Mixtacki J, Stoye J: A unifying view of genome rearrangements. Proc. of WABI 2006, LNBI 2006, 4175: 163–173.

2. Braga MDV, Stoye J: The solution space of sorting by DCJ. Journal of Computational Biology 2010, 17(9):1145–1165. 10.1089/cmb.2010.0109

3. Hannenhalli S, Pevzner P: Transforming men into mice (polynomial algorithm for genomic distance problem). Proc. of FOCS 1995, 581–592.

4. El-Mabrouk N: Sorting Signed Permutations by Reversals and Insertions/Deletions of Contiguous Segments. Journal of Discrete Algorithms 2001, 1: 105–122.

5. Yancopoulos S, Friedberg R: DCJ path formulation for genome transformations which include insertions, deletions, and duplications. Journal of Computational Biology 2009, 16(10):1311–1338. 10.1089/cmb.2009.0092

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1. Generalizations of the genomic rank distance to indels;Bioinformatics;2023-02-15

2. Generalizations of the Genomic Rank Distance to Indels;Algorithms for Computational Biology;2019

3. Genome Rearrangement Problems with Single and Multiple Gene Copies: A Review;Bioinformatics and Phylogenetics;2019

4. Sorting Linear Genomes with Rearrangements and Indels;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2015-05-01

5. Orthology Detection Combining Clustering and Synteny for Very Large Datasets;PLoS ONE;2014-08-19

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