RecMotif: a novel fast algorithm for weak motif discovery

Author:

Sun He Quan,Low Malcolm Yoke Hean,Hsu Wen Jing,Rajapakse Jagath C

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference26 articles.

1. Pevzner PA, Sze SH: Combinatorial approaches to finding subtle signals in DNA sequences. Proceedings of the 8th International Conference on Intelligient Systems for Molecular Biology 2000, 269–278.

2. Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. In Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology. Menlo Park, California: AAAI Press; 1994:28–36.

3. Lawrence CE, Altschul SF: Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, New Series 1993, 262(5131):208–214.

4. Buhler J, Tompa M: Finding motifs using random projections. Journal of Computational Biology 2002, 9(2):225–242.

5. Rajasekaran S, Balla S, Huang CH: Exact algorithms for planted motif challenge problems. Proceedings of the 3rd Asia-Pacific Bioinformatics Conference 2005, 249–259.

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