Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG-Reference-Cited by-同舟云学术

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Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

Published:2011-02-15 Issue:S1 Volume:12 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Mitra Suparna,Rupek Paul,Richter Daniel C,Urich Tim,Gilbert Jack A,Meyer Folker,Wilke Andreas,Huson Daniel H

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-12-S1-S21.pdf

Reference18 articles.

1. Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, et al.: The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005, 33(17):5691–5702. 10.1093/nar/gki866

2. Lozupone C, Hamady M, Knight R: UniFrac - An Online Tool for Comparing Microbial Community Diversity in a Phylogenetic Context. BMC Bioinformatics 2006, 7: 371. 10.1186/1471-2105-7-371

3. Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J: Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Res 2008, 36(7):2230–2239. 10.1093/nar/gkn038

4. Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, Zhao X, Dubchak I, Hugenholtz P, Anderson I, Lykidis A, Mavrommatis K, Ivanova N, Kyrpides N: The integrated microbial genomes (IMG) system. Nucleic Acids Research 2006, 34(Database-Issue):344–348. 10.1093/nar/gkj024

5. Markowitz VM, Ivanova NN, Szeto E, Palaniappan K, Chu K, Dalevi D, Chen IA, Grechkin Y, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Hugenholtz P, Kyrpides NC: IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 2008, 36: D534-D538. 10.1093/nar/gkm869

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