Protein complex detection using interaction reliability assessment and weighted clustering coefficient

Author:

Zaki Nazar,Efimov Dmitry,Berengueres Jose

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference36 articles.

1. Zaki NM, Berengueres J, Efimov: ProRank: A method for detecting protein complexes. Proceedings of the ACM Genetic and Evolutionary Computation Conference (GECCO). 2012, Philadelphia, 209-216.

2. Dongen SM: Graph Clustering by Flow Simulation. 2000, Domplein 29, 3512 JE Utrecht, Netherlands: University of Utrecht

3. Macropol K, Can T, Singh A: RRW: repeated random walks on genome-scale protein networks for local cluster discovery. BMC Bioinformatics. 2009, 10 (283):

4. Andrew DK, Przulj N, Jurisica I: Protein complex prediction via cost-based clustering. Bioinformatics. 2004, 20 (17): 3013-3020.

5. Przulj N, Jurisica I, Wigle D A: Functional topology in a network of protein interactions. Bioinformatics. 2004, 20 (3): 340-348.

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