Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power-Reference-Cited by-同舟云学术

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Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power

Published:2012-04-12 Issue:S5 Volume:13 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Zhang Yuhong,Misra Sanchit,Agrawal Ankit,Patwary Md Mostofa Ali,Liao Wei-keng,Qin Zhiguang,Choudhary Alok

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-13-S5-S3.pdf

Reference46 articles.

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3. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos JS, Bealer K, Madden TL: BLAST+: architecture and applications. BMC Bioinformatics 2009, 10: 421. 10.1186/1471-2105-10-421

4. Altschul S, Madden T, Schäffer A, Zhang J, Zhang Z, Miller W, Lipman D: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997, 25(17):3389–3402. 10.1093/nar/25.17.3389

5. Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF: Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Research 2001, 29(14):2994–3005. 10.1093/nar/29.14.2994

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