Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences-Reference-Cited by-同舟云学术

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Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences

Published:2007-11-28 Issue:1 Volume:8 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Engelen Stéfan,Tahi Fariza

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-8-464.pdf

Reference34 articles.

1. Doty P, Boedtker H, Fresco J, Haselkorn R, Litt M: Secondary structure in ribonucleic acids. Proc Natl Acad Sci 1959, 45: 482–499. 10.1073/pnas.45.4.482

2. Lescoute A, Leontis NB, Massire C, Westhof E: Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments. Nucleic Acids Research 2005, 33(8):2395–2409. 10.1093/nar/gki535

3. Freier S, Kierzeck R, Jaeger J, Sugimoto N, Caruthers M, Neilson T, Turner D: Improved free-energy parameters for predictions of RNA duplex stability. Proc Natl Acad Sci 1986, 83: 9373–9377. 10.1073/pnas.83.24.9373

4. Matthews D, Sabina J, Zuker M, Turner D: Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 1999, 288: 911–940. 10.1006/jmbi.1999.2700

5. Nussinov R, Jacobson A: Fast algorithm for predicting the secondary structure of single-strand RNA. Proc Natl Acad Sci 1980, 77: 6309–6313. 10.1073/pnas.77.11.6309

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