Transcript quantification with RNA-Seq data-Reference-Cited by-同舟云学术

Transcript quantification with RNA-Seq data

Published:2009-10 Issue:S13 Volume:10 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Bohnert Regina,Behr Jonas,Rätsch Gunnar

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-10-S13-P5.pdf

Reference5 articles.

1. Wang Z, Gerstein M, Snyder M: RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 2009, 10: 57–63. 10.1038/nrg2484

2. Sammeth M: Flux Simulator.2009. [ http://flux.sammeth.net/simulator.html ]

3. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5: 621–628. 10.1038/nmeth.1226

4. Jiang H, Wong WH: Statistical inferences for isoform expression in RNA-Seq. Bioinformatics 2009, 25(8):1026–1032. 10.1093/bioinformatics/btp113

5. Schweikert G, Zien A, Zeller G, Behr J, Dieterich C, Ong CS, Philips P, De Bona F, Hartmann L, Bohlen A, Krüger N, Sonnenburg S, Rätsch G: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 2009. doi:10.1101/gr.090597.108. doi:10.1101/gr.090597.108.

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