A comparative study of conservation and variation scores

Author:

Johansson Fredrik,Toh Hiroyuki

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference38 articles.

1. Valdar WS: Scoring residue conservation. Proteins 2002, 48(2):227–241. 10.1002/prot.10146

2. Porter CT, Bartlett GJ, Thornton JM: The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res 2004, (32 Database):D129-D133. 10.1093/nar/gkh028

3. Jones DT, Taylor WR, Thornton JM: The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 1992, 8(3):275–282.

4. Mihalek I, Res I, Lichtarge O: Background frequencies for residue variability estimates: BLOSUM revisited. BMC Bioinformatics 2007, 8: 488. 10.1186/1471-2105-8-488

5. Jeffery IB, Higgins DG, Culhane AC: Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinformatics 2006, 7: 359. 10.1186/1471-2105-7-359

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