A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

Author:

Peng Yifan,Torii Manabu,Wu Cathy H,Vijay-Shanker K

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Reference60 articles.

1. Vlachos A, Craven M: Biomedical event extraction from abstracts and full papers using search-based structured prediction. BMC Bioinformatics. 2012, 13 (Suppl 11): S5-10.1186/1471-2105-13-S11-S5.

2. Riedel S, McClosky D, Surdeanu M, McCallum A, Manning CD: Model combination for event extraction in BioNLP 2011. Proceedings of the BioNLP Shared Task 2011 Workshop. 2011, Portland, Oregon: Association for Computational Linguistics, 51-55.

3. Björne J, Salakoski T: Generalizing biomedical event extraction. Proceedings of the BioNLP Shared Task 2011 Workshop. 2011, Portland, Oregon: Association for Computational Linguistics, 183-191.

4. Bui QC, Katrenko S, Sloot PM: A hybrid approach to extract protein–protein interactions. Bioinformatics. 2011, 27 (2): 259-265. 10.1093/bioinformatics/btq620.

5. Kim S, Yoon J, Yang J, Park S: Walk-weighted subsequence kernels for protein–protein interaction extraction. BMC Bioinformatics. 2010, 11: 107-10.1186/1471-2105-11-107.

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