Efficient reconstruction of biological networks via transitive reduction on general purpose graphics processors-Reference-Cited by-同舟云学术

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Efficient reconstruction of biological networks via transitive reduction on general purpose graphics processors

Published:2012-10-30 Issue:1 Volume:13 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Bošnački Dragan,Odenbrett Maximilian R,Wijs Anton,Ligtenberg Willem,Hilbers Peter

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1471-2105-13-281.pdf

Reference26 articles.

1. Aho AV, Garey MR, Ullman JD: The transitive reduction of a directed graph. SIAM J Comput 1972, 1(2):131–137. 10.1137/0201008

2. Hu Z, Killion P, Iyer V: Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 2007, 39(5):683–687. 10.1038/ng2012

3. Margolin A, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Favera R, Califano A: Aracne: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 2006, 7(Suppl 1):S7. 10.1186/1471-2105-7-S1-S7

4. Tresch A, Beissbarth T, Sültmann H, Kuner R, Poustka A, Buness A: Discrimination of direct and indirect interactions in a network of regulatory effects. J Comput Biol 2007, 14(9):1217–1228. 10.1089/cmb.2007.0085

5. Wagner A: How to reconstruct a large genetic network from n gene perturbations in fewer than n2 easy steps. Bioinformatics 2001, 17(12):1183–1197. 10.1093/bioinformatics/17.12.1183

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