Genetically improved BarraCUDA

Author:

Langdon W. B.,Lam Brian Yee Hong

Funder

Engineering and Physical Sciences Research Council

Publisher

Springer Science and Business Media LLC

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Genetics,Molecular Biology,Biochemistry

Reference36 articles.

1. Owens JD, Houston M, Luebke D, Green S, Stone JE, Phillips JC. GPU Computing. Proc IEEE. 2008; 96(5):879–99. http://dx.doi.org/doi:10.1109/JPROC.2008.917757 . Invited paper.

2. Klus P, Lam S, Lyberg D, Cheung MS, Pullan G, McFarlane I, Yeo GSH, Lam BYH. BarraCUDA - a fast short read sequence aligner using graphics processing units. BMC Res Notes. 2012; 5(27). http://dx.doi.org/doi:10.1186/1756-0500-5-27 .

3. Langdon WB, Lam BYH, Petke J, Harman M. Improving CUDA DNA Analysis Software with Genetic Programming In: Silva S, Esparcia-Alcazar AI, Lopez-Ibanez M, Mostaghim S, Timmis J, Zarges C, Correia L, Soule T, Giacobini M, Urbanowicz R, Akimoto Y, Glasmachers T, Fernandez de Vega F, Hoover A, Larranaga P, Soto M, Cotta C, Pereira FB, Handl J, Koutnik J, Gaspar-Cunha A, Trautmann H, Mouret JB, Risi S, Costa E, Schuetze O, Krawiec K, Moraglio A, Miller JF, Widera P, Cagnoni S, Merelo J, Hart E, Trujillo L, Kessentini M, Ochoa G, Chicano F, Doerr C, editors. GECCO ’15: Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation. Madrid: ACM: 2015. p. 1063–70. http://dx.doi.org/doi:10.1145/2739480.2754652 .

4. Koza JR. Genetic Programming: On the Programming of Computers by Natural Selection: MIT press; 1992.

5. Poli R, Langdon WB, McPhee NF. A field guide to genetic programming; 2008. Published via http://lulu.com and freely available at http://www.gp-field-guide.org.uk . (With contributions by J. R. Koza).

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