McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes-Reference-Cited by-同舟云学术

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McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes

Published:2017-10-26 Issue:1 Volume:18 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Hafez Dina,Karabacak Aslihan,Krueger Sabrina,Hwang Yih-Chii,Wang Li-San,Zinzen Robert P.,Ohler Uwe

Funder

National Institute of General Medical Sciences

National Institute on Aging

Human Frontier Science Program

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-017-1316-x.pdf

Reference66 articles.

1. Calhoun VC, Levine M. Long-range enhancer–promoter interactions in the Scr-Antp interval of the Drosophila Antennapedia complex. Proc Natl Acad Sci. 2003; 100(17):9878–83.

2. Nobrega MA, Ovcharenko I, Afzal V, Rubin EM. Scanning human gene deserts for long-range enhancers. Science. 2003; 302(5644):413–3.

3. Markstein M, Zinzen R, Markstein P, Yee KP, Erives A, Stathopoulos A, Levine M. A regulatory code for neurogenic gene expression in the Drosophila embryo. Development. 2004; 131(10):2387–94.

4. Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE. High-resolution mapping and characterization of open chromatin across the genome. Cell. 2008; 132(2):311–22.

5. Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, et al. The accessible chromatin landscape of the human genome. Nature. 2012; 489(7414):75–82.

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