DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition-Reference-Cited by-同舟云学术

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

Published:2017-12 Issue:1 Volume:18 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Audoux Jérôme,Philippe Nicolas,Chikhi Rayan,Salson Mikaël,Gallopin Mélina,Gabriel Marc,Le Coz Jérémy,Drouineau Emilie,Commes Thérèse,Gautheret Daniel^ORCID

Funder

Plan Cancer – Systems Biology

ANR (France)

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-017-1372-2.pdf

Reference55 articles.

1. Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, et al.GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 2012; 22(9):1760–74. https://doi.org/10.1101/gr.135350.111 .

2. Nishikura K. Functions and regulation of RNA editing by ADAR deaminases. Ann Rev Biochem. 2010; 79:321–49. https://doi.org/10.1146/annurev-biochem-060208-105251 .

3. Chen LL. The biogenesis and emerging roles of circular RNAs. Nat Rev Mol Cell Biol. 2016; 17(4):205–11. https://doi.org/10.1038/nrm.2015.32 .

4. Kirchner S, Ignatova Z. Emerging roles of tRNA in adaptive translation, signalling dynamics and disease. Nat Rev Genet. 2015; 16(2):98–112. https://doi.org/10.1038/nrg3861 .

5. Dieci G, Preti M, Montanini B. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Genomics. 2009; 94(2):83–8. https://doi.org/10.1016/j.ygeno.2009.05.002 .

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