PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
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Publisher
Springer Science and Business Media LLC
Link
http://link.springer.com/content/pdf/10.1186/s13059-019-1663-x.pdf
Reference38 articles.
1. Wagner A, Regev A, Yosef N. Revealing the vectors of cellular identity with single-cell genomics. Nat Biotechnol. 2016; 34(11):1145–60. https://doi.org/10.1038/nbt.3711 .
2. Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, Lennon NJ, Livak KJ, Mikkelsen T. S, Rinn JL. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat Biotechnol. 2014; 32(4):381–6. https://doi.org/10.1038/nbt.2859 .
3. Bendall SC, Davis KL, Amir E-aD, Tadmor MD, Simonds EF, Chen TJ, Shenfeld DK, Nolan GP, Pe’er D. Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development. Cell. 2014; 157(3):714–25. https://doi.org/10.1016/j.cell.2014.04.005 .
4. Saelens W, Cannoodt R, Todorov H, Saeys Y. A comparison of single-cell trajectory inference methods: towards more accurate and robust tools. bioRxiv. 2018;:276907. https://doi.org/10.1101/276907 .
5. Qiu X, Hill A, Packer J, Lin D, Ma YA, Trapnell C. Single-cell mRNA quantification and differential analysis with census. Nat Methods. 2017; 14:309–15. https://doi.org/10.1038/nmeth.4150 .
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