stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage
Author:
Funder
IAP research network: StUDyS grant
Research Foundation - Flanders (FWO)
Forschungskredit
Publisher
Springer Science and Business Media LLC
Link
http://link.springer.com/content/pdf/10.1186/s13059-017-1277-0.pdf
Reference47 articles.
1. Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE. Flexible expressed region analysis for RNA-seq with derfinder. Nucleic Acids Res. 2016:852. doi: 10.1093/nar/gkw852 .
2. Anders S, Reyes A, Huber W. Detecting differential usage of exons from RNA-seq data. Genome Res. 2012; 22(10):2008–17. doi: 10.1101/gr.133744.111 .
3. Bray NL, Pimentel H, Melsted P, Pachter L. Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. 2016; 34(5):525–7. doi: 10.1038/nbt.3519 .
4. Liao Y, Smyth GK, Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics (Oxford, England). 2014; 30(7):923–30. doi: 10.1093/bioinformatics/btt656 .
5. Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinforma. 2011; 12(1):323. doi: 10.1186/1471-2105-12-323 .
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