Efficient inference of large prokaryotic pangenomes with PanTA-Reference-Cited by-同舟云学术

Efficient inference of large prokaryotic pangenomes with PanTA

Published:2024-08-06 Issue:1 Volume:25 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Le Duc Quang,Nguyen Tien Anh,Nguyen Son Hoang,Nguyen Tam Thi,Nguyen Canh Hao,Phung Huong Thanh,Ho Tho Huu,Vo Nam S.,Nguyen Trang,Nguyen Hoang Anh,Cao Minh Duc^ORCID

Funder

VinIF

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1186/s13059-024-03362-z.pdf

Reference42 articles.

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2. Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome’’. Proc Natl Acad Sci. 2005;102(39):13950–5. https://doi.org/10.1073/pnas.0506758102.

3. Kim Y, Gu C, Kim HU, Lee SY. Current status of pan-genome analysis for pathogenic bacteria. Curr Opin Biotechnol. 2020;63:54–62. https://doi.org/10.1016/j.copbio.2019.12.001.

4. Pinto M, González-Díaz A, Machado MP, Duarte S, Vieira L, Carriço JA, Marti S, et al. Insights into the population structure and pan-genome of Haemophilus influenzae. Infect Genet Evol. 2019;67:126–35. https://doi.org/10.1016/j.meegid.2018.10.025.

5. Freschi L, Vincent AT, Jeukens J, Emond-Rheault J-G, Kukavica-Ibrulj I, Dupont M-J, Charette SJ, et al. The Pseudomonas aeruginosa pan-genome provides new insights on its population structure, horizontal gene transfer, and pathogenicity. Genome Biol Evol. 2019;11(1):109–20. https://doi.org/10.1093/gbe/evy259.

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