The impact of read length on quantification of differentially expressed genes and splice junction detection
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Publisher
Springer Science and Business Media LLC
Link
http://link.springer.com/content/pdf/10.1186/s13059-015-0697-y.pdf
Reference16 articles.
1. Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, et al. High-resolution profiling of histone methylations in the human genome. Cell. 2007;129:823–37.
2. Rosenfeld JA, Xuan Z, DeSalle R. Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3. Epigenetics. 2009;4:476–86.
3. Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, et al. Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study. Nat Biotechnol. 2014;32:915–25. doi: 10.1038/nbt.2972 .
4. Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 2011;12:323. doi: 10.1186/1471-2105-12-323 .
5. Leng N, Dawson J, Thomson J, Ruotti V, Rissman AI, Smits BMG. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics. 2013;29:1035–43. doi: 10.1093/bioinformatics/btt087 .
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