Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits

Author:

Zhang Kaixuan,He Ming,Fan Yu,Zhao Hui,Gao Bin,Yang Keli,Li Faliang,Tang Yu,Gao Qiang,Lin Tao,Quinet Muriel,Janovská Dagmar,Meglič Vladimir,Kwiatkowski Jacek,Romanova Olga,Chrungoo Nikhil,Suzuki Tatsuro,Luthar Zlata,Germ Mateja,Woo Sun-Hee,Georgiev Milen I.,Zhou MeiliangORCID

Abstract

AbstractBackgroundTartary buckwheat (Fagopyrum tataricum) is a nutritionally balanced and flavonoid-rich crop plant that has been in cultivation for 4000 years and is now grown globally. Despite its nutraceutical and agricultural value, the characterization of its genetics and its domestication history is limited.ResultsHere, we report a comprehensive database of Tartary buckwheat genomic variation based on whole-genome resequencing of 510 germplasms. Our analysis suggests that two independent domestication events occurred in southwestern and northern China, resulting in diverse characteristics of modern Tartary buckwheat varieties. Genome-wide association studies for important agricultural traits identify several candidate genes, includingFtUFGT3andFtAP2YT1that significantly correlate with flavonoid accumulation and grain weight, respectively.ConclusionsWe describe the domestication history of Tartary buckwheat and provide a detailed resource of genomic variation to allow for genomic-assisted breeding in the improvement of elite cultivars.

Funder

National Key R&D Program of China

National Natural Science Foundation of China

Innovative Research Group Project of the National Natural Science Foundation of China

European Union Horizon 2020 project ECOBREED

Planta SYST

Publisher

Springer Science and Business Media LLC

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