Computing tumor trees from single cells-Reference-Cited by-同舟云学术

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Computing tumor trees from single cells

Published:2016-05-26 Issue:1 Volume:17 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Davis Alexander,Navin Nicholas E.

Funder

National Cancer Institute (US)

American Cancer Society (US)

Lefkofsky Foundation

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-016-0987-z

Reference10 articles.

1. Jahn K, Kuipers J, Beerenwinkel N. Tree inference for single-cell data. Genome Biol. 2016;17:86. doi: 10.1186/s13059-016-0936-x .

2. Ross EM, Markowetz F. OncoNEM: inferring tumor evolution from single-cell sequencing data. Genome Biol. 2016;17:69. doi: 10.1186/s13059-016-0929-9 .

3. Roth A, Khattra J, Yap D, Wan A, Laks E, Biele J, et al. PyClone: statistical inference of clonal population structure in cancer. Nat Methods. 2014;11:396–8. doi: 10.1038/nmeth.2883 .

4. Yuan K, Sakoparnig T, Markowetz F, Beerenwinkel N. BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies. Genome Biol. 2015;16:36. doi: 10.1186/s13059-015-0592-6 .

5. Qiao Y, Quinlan AR, Jazaeri AA, Verhaak RG, Wheeler DA, Marth GT. SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization. Genome Biol. 2014;15:443. doi: 10.1186/s13059-014-0443-x .

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