Performance evaluation for MOTIFSIM
Author:
Funder
U.S. Department of Education Graduate Fellowships in Areas of National Need
Publisher
Springer Science and Business Media LLC
Subject
General Biochemistry, Genetics and Molecular Biology
Link
http://link.springer.com/content/pdf/10.1186/s12575-018-0088-3.pdf
Reference37 articles.
1. Zambelli F, Pesole G, Pavesi G. Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. Brief Bioinform. 2012;14:225–37.
2. Bulyk ML. Computational prediction of transcription-factor binding site locations. Genome Biol. 2003;5(1):201.
3. Bailey T, Williams N, Misleh C, Li W. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 2006;34(Web Server):W369–73.
4. Bailey T. DREME: motif discovery in transcription factor ChIP-seq data. Bioinformatics. 2011;27(12):1653–9.
5. Machanick P, Bailey T. MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics. 2011;27(12):1696–7.
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