Determining modular organization of protein interaction networks by maximizing modularity density-Reference-Cited by-同舟云学术

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Determining modular organization of protein interaction networks by maximizing modularity density

Published:2010-09 Issue:S2 Volume:4 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Zhang Shihua,Ning Xue-Mei,Ding Chris,Zhang Xiang-Sun

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modelling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1752-0509-4-S2-S10.pdf

Reference31 articles.

1. Barabasi A, Oltvai Z: Network biology: understanding the cell's functional organization. Nature Rev. Gen. 2004, 5: 101-113. 10.1038/nrg1272.

2. Zhang S, Jin G, Zhang XS, Chen L: Discovering functions and revealing mechanisms at molecular level from biological networks. Proteomics. 2007, 7: 2856-2869. 10.1002/pmic.200700095

3. Zhao J, Yu H, Luo JH, Cao ZW, Li YX: Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinformatics. 2006, 7: 386- 10.1186/1471-2105-7-386

4. Brun C, Chevenet F, Martin D, Wojcik J, Guenoche A, Jacq B: Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome Biol. 2003, 5: R6- 10.1186/gb-2003-5-1-r6

5. Lu H, Zhu X, Liu H, Skogerbo G, Zhang J, Zhang Y, Cai L, Zhao Y, Sun S, Xu J, Bu D, Chen R: The interactome as a tree–an attempt to visualize the protein-protein interaction network in yeast. Nucleic Acids Res. 2004, 32: 4804-4811. 10.1093/nar/gkh814

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