Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis-Reference-Cited by-同舟云学术

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis

Published:2010-08-18 Issue:1 Volume:4 Page:
ISSN:1752-0509
Container-title:BMC Systems Biology
language:en
Short-container-title:BMC Syst Biol

Author:

Kaleta Christoph,Göhler Anna,Schuster Stefan,Jahreis Knut,Guthke Reinhard,Nikolajewa Swetlana

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Modeling and Simulation,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/1752-0509-4-116.pdf

Reference34 articles.

1. Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R: Gene regulatory network inference: data integration in dynamic models-a review. Biosystems. 2009, 96: 86-103. 10.1016/j.biosystems.2008.12.004

2. Butte AJ, Kohane IS: Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac Symp Biocomput. 2000, 418-429.

3. Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A: Reverse engineering of regulatory networks in human B cells. Nat Genet. 2005, 37 (4): 382-390. 10.1038/ng1532

4. Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Favera RD, Califano A: ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics. 2006, 7 (Suppl 1): S7- 10.1186/1471-2105-7-S1-S7

5. Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS: Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol. 2007, 5: e8- 10.1371/journal.pbio.0050008

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