TISSUE CLASSIFICATION FOR COLORECTAL CANCER UTILIZING TECHNIQUES OF DEEP LEARNING AND MACHINE LEARNING

Author:

Damkliang Kasikrit1ORCID,Wongsirichot Thakerng1,Thongsuksai Paramee2

Affiliation:

1. Division of Computational Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand

2. Department of Pathology, Faculty of Medicine, Prince of Songkla University, Hat Yai, Songkhla 90110, Thailand

Abstract

Since the introduction of image pattern recognition and computer vision processing, the classification of cancer tissues has been a challenge at pixel-level, slide-level, and patient-level. Conventional machine learning techniques have given way to Deep Learning (DL), a contemporary, state-of-the-art approach to texture classification and localization of cancer tissues. Colorectal Cancer (CRC) is the third ranked cause of death from cancer worldwide. This paper proposes image-level texture classification of a CRC dataset by deep convolutional neural networks (CNN). Simple DL techniques consisting of transfer learning and fine-tuning were exploited. VGG-16, a Keras pre-trained model with initial weights by ImageNet, was applied. The transfer learning architecture and methods responding to VGG-16 are proposed. The training, validation, and testing sets included 5000 images of 150 × 150 pixels. The application set for detection and localization contained 10 large original images of 5000 × 5000 pixels. The model achieved F1-score and accuracy of 0.96 and 0.99, respectively, and produced a false positive rate of 0.01. AUC-based evaluation was also measured. The model classified ten large previously unseen images from the application set represented in false color maps. The reported results show the satisfactory performance of the model. The simplicity of the architecture, configuration, and implementation also contributes to the outcome this work.

Funder

Prince of Songkla University

Publisher

National Taiwan University

Subject

Biomedical Engineering,Bioengineering,Biophysics

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