Applicability of Object Detection to Microfossil Research: Implications From Deep Learning Models to Detect Microfossil Fish Teeth and Denticles Using YOLO‐v7

Author:

Mimura K.12ORCID,Nakamura K.123ORCID,Yasukawa K.23ORCID,Sibert E. C.4ORCID,Ohta J.135,Kitazawa T.2,Kato Y.126ORCID

Affiliation:

1. Ocean Resources Research Center for Next Generation Chiba Institute of Technology Narashino Japan

2. Department of Systems Innovation School of Engineering The University of Tokyo Bunkyo‐ku Japan

3. Frontier Research Center for Energy and Resources School of Engineering The University of Tokyo Bunkyo‐ku Japan

4. Department of Geology & Geophysics Woods Hole Oceanographic Institution Woods Hole MA USA

5. Volcanoes and Earth's Interior Research Center Research Institute for Marine Geodynamics Japan Agency for Marine‐Earth Science and Technology (JAMSTEC) Yokosuka Japan

6. Submarine Resources Research Center Research Institute for Marine Resources Utilization Japan Agency for Marine‐Earth Science and Technology (JAMSTEC) Yokosuka Japan

Abstract

AbstractMicrofossils of fish teeth and denticles, referred to as ichthyoliths, provide critical information for depositional ages, paleo‐environments, and marine ecosystems, especially in pelagic realms. However, owing to their small size and rarity, it is time‐consuming and difficult to analyze large numbers of ichthyoliths from sediment samples, limiting their use in scientific studies. Here, we propose a method to automatically detect ichthyoliths from microscopic images using a deep learning technique. We applied YOLO‐v7, one of the latest object detection architectures, and trained several models under different conditions. The model trained under appropriate conditions with an original data set achieved an F1 score of 0.87. We then enhanced the data set efficiently using the pre‐trained model. We validated the practical applicability of the model by comparing the number of ichthyoliths detected by the model with those counted manually. This revealed that the best model can predict the number of triangular teeth, denticles and irregularly shaped teeth with minimal human intervention. This object detection method can extend the applicability of deep learning to a wider array of microfossils and has the potential to dramatically increase the spatiotemporal resolution of ichthyolith records for applications across disciplines.

Funder

Japan Society for the Promotion of Science

Fusion Oriented REsearch for disruptive Science and Technology

National Science Foundation

Publisher

American Geophysical Union (AGU)

Subject

General Earth and Planetary Sciences,Environmental Science (miscellaneous)

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